Index

A

activate (ClassificationModelSelection attribute) (RegressionModelSelection attribute) activate() (AnomalyDetectionModelSelection method) (ClusteringModelSelection method) (DecompositionModelSelection method) active_scientific_execution() (in module geochemistrypi.scientific_execution) AdaBoostClassification (class in geochemistrypi.data_mining.model.classification) AffinityPropagationClustering (class in geochemistrypi.data_mining.model.clustering) Agglomerative (class in geochemistrypi.data_mining.model.clustering) ANOMALY_DETECTION (ModeOption attribute) AnomalyDetectionModelSelection (class in geochemistrypi.data_mining.process.detect) AnomalyDetectionWorkflowBase (class in geochemistrypi.data_mining.model.detection)

ANY_PATH (DataSource attribute) append_feature() (FeatureConstructor method), [1] as_record() (ScientificExecutionContract method) authenticate_user() (in module geochemistrypi.auth.service) auto_best_config (ClassificationWorkflowBase property) (RegressionWorkflowBase property) auto_model (ClassificationWorkflowBase property) (RegressionWorkflowBase property) automation_input_adapter() (in module geochemistrypi.automation) AutomationContractError AutomationInput (class in geochemistrypi.automation) AutomationInputAdapter (class in geochemistrypi.automation) AutomationPlan (class in geochemistrypi.automation)

B

basic_info() (in module geochemistrypi.data_mining.data.data_readiness), [1] basic_statistic() (in module geochemistrypi.data_mining.plot.statistic_plot) BasicDatasetInfo (class in geochemistrypi.data_mining.schemas) batch_build() (FeatureConstructor method), [1] BayesianRidgeRegression (class in geochemistrypi.data_mining.model.regression) bins (LabelMappingConfig attribute)

BIRCHClusteringClustering (class in geochemistrypi.data_mining.model.clustering) BisectingKMeansClustering (class in geochemistrypi.data_mining.model.clustering) bool_input() (in module geochemistrypi.data_mining.data.data_readiness), [1] build() (FeatureConstructor method), [1] build_scientific_execution_template() (in module geochemistrypi.scientific_config) build_transform_pipeline() (in module geochemistrypi.data_mining.data.inference) BUILT_IN (DataSource attribute)

C

cal_words (FeatureConstructor attribute), [1] chain() (PipelineConstrutor method) check_missing_value() (in module geochemistrypi.data_mining.plot.statistic_plot) check_package() (in module geochemistrypi.data_mining.utils.base) child_result() (in module geochemistrypi.data_mining.aggregate) ClassicalLinearRegression (class in geochemistrypi.data_mining.model.regression) CLASSIFICATION (ModeOption attribute) (ModeOptionWithMissingValues attribute) classification_metric_average (ScientificExecutionContract attribute) classification_positive_label (ScientificExecutionContract attribute) ClassificationModelSelection (class in geochemistrypi.data_mining.process.classify) ClassificationRunRequest (class in geochemistrypi.data_mining.schemas) ClassificationWorkflowBase (class in geochemistrypi.data_mining.model.classification) clear_output() (in module geochemistrypi.data_mining.utils.base) cli_pipeline() (in module geochemistrypi.data_mining.cli_pipeline) CLUSTERING (ModeOption attribute) (ModeOptionWithMissingValues attribute) ClusteringModelSelection (class in geochemistrypi.data_mining.process.cluster) ClusteringWorkflowBase (class in geochemistrypi.data_mining.model.clustering) common_components (ClassificationWorkflowBase attribute) (RegressionWorkflowBase attribute) common_components() (AnomalyDetectionWorkflowBase method) (ClusteringWorkflowBase method) (DecompositionWorkflowBase method) common_function (AnomalyDetectionWorkflowBase attribute) (ClassificationWorkflowBase attribute) (ClusteringWorkflowBase attribute) (DecompositionWorkflowBase attribute) (RegressionWorkflowBase attribute)

compute_binned_time_series() (in module geochemistrypi.data_mining.process.time_series) compute_subaerial_proportion() (in module geochemistrypi.data_mining.process.time_series) confusion_matrix_normalization (ScientificExecutionContract attribute) constructor_parameters() (ScientificExecutionContract method) copy_files() (in module geochemistrypi.data_mining.utils.base) copy_files_from_source_dir_to_dest_dir() (in module geochemistrypi.data_mining.utils.base) correlation_plot() (in module geochemistrypi.data_mining.plot.statistic_plot) create_access_token() (in module geochemistrypi.auth.utils) create_geopi_output_dir() (in module geochemistrypi.data_mining.utils.base) create_new_user() (in module geochemistrypi.auth.service) create_sub_data_set() (in module geochemistrypi.data_mining.data.data_readiness), [1] cross_validation_folds (ScientificExecutionContract attribute) custom_openapi() (in module geochemistrypi.start_dash_pipeline) customization (AdaBoostClassification property) (BayesianRidgeRegression property) (ClassificationWorkflowBase property) (DecisionTreeClassification property) (DecisionTreeRegression property) (ElasticNetRegression property) (GradientBoostingClassification property) (GradientBoostingRegression property) (LassoRegression property) (RegressionWorkflowBase property) (RidgeRegression property) (SGDClassification property) (SGDRegression property) (SVMClassification property) (SVMRegression property) customize_label() (ClassificationWorkflowBase static method)

D

dash_pipeline() (in module geochemistrypi.data_mining.dash_pipeline) data_mining() (in module geochemistrypi.cli) data_split() (in module geochemistrypi.data_mining.data.data_readiness), [1] DatabaseConfigurationError Dataset (class in geochemistrypi.data_mining.schemas) (class in geochemistrypi.data_mining.sql_models) dataset (Diagram attribute) dataset_catalog() (in module geochemistrypi.data_mining.datasets) dataset_catalog_json() (in module geochemistrypi.data_mining.datasets) dataset_id (ClassificationRunRequest attribute) (Diagram attribute), [1] DatasetCatalogError datasets (User attribute) datasets() (in module geochemistrypi.cli)

DataSource (class in geochemistrypi.data_mining.enum_) DBSCANClustering (class in geochemistrypi.data_mining.model.clustering) DecisionTreeClassification (class in geochemistrypi.data_mining.model.classification) DecisionTreeRegression (class in geochemistrypi.data_mining.model.regression) decode_access_token() (in module geochemistrypi.auth.utils) DecompositionModelSelection (class in geochemistrypi.data_mining.process.decompose) DecompositionWorkflowBase (class in geochemistrypi.data_mining.model.decomposition) delete_dataset() (in module geochemistrypi.data_mining.router) DESKTOP (DataSource attribute) desktop_input_root() (in module geochemistrypi.data_mining.datasets) Diagram (class in geochemistrypi.data_mining.schemas) (class in geochemistrypi.data_mining.sql_models) diagrams (Dataset attribute) DIMENSIONAL_REDUCTION (ModeOption attribute) distribution_plot() (in module geochemistrypi.data_mining.plot.statistic_plot)

E

ElasticNetRegression (class in geochemistrypi.data_mining.model.regression) email (User attribute) (UserBase attribute) embedding_label_overlay() (in module geochemistrypi.cli) enabled (WorldMapConfiguration attribute)

evaluation_mode (ScientificExecutionContract attribute) external_evaluation_identifier_column (ScientificExecutionContract attribute) external_evaluation_target_columns (ScientificExecutionContract attribute) ExtraTreesClassification (class in geochemistrypi.data_mining.model.classification) ExtraTreesRegression (class in geochemistrypi.data_mining.model.regression)

F

feature_scaler() (in module geochemistrypi.data_mining.data.preprocessing), [1] feature_selector() (in module geochemistrypi.data_mining.data.preprocessing), [1] FeatureConstructor (class in geochemistrypi.data_mining.data.feature_engineering), [1] fit (ClassificationWorkflowBase attribute) (RegressionWorkflowBase attribute) (XGBoostClassification attribute) fit() (AnomalyDetectionWorkflowBase method) (ClusteringWorkflowBase method) (DecompositionWorkflowBase method) (MeanNormalScaler method), [1]

fit_training_transform_pipeline() (in module geochemistrypi.data_mining.data.inference) fit_transform() (DecompositionWorkflowBase method) float_input() (in module geochemistrypi.data_mining.data.data_readiness), [1] from_json() (WorldMapConfiguration class method)

G

GaussianMixturesClustering (class in geochemistrypi.data_mining.model.clustering) geochemistrypi module geochemistrypi.auth module geochemistrypi.auth.constants module geochemistrypi.auth.dependencies module geochemistrypi.auth.router module geochemistrypi.auth.schemas module geochemistrypi.auth.service module geochemistrypi.auth.sql_models module geochemistrypi.auth.utils module geochemistrypi.automation module geochemistrypi.cli module geochemistrypi.data_mining module geochemistrypi.data_mining.aggregate module geochemistrypi.data_mining.cli_pipeline module geochemistrypi.data_mining.constants module geochemistrypi.data_mining.dash_pipeline module geochemistrypi.data_mining.data module geochemistrypi.data_mining.data.data_readiness module, [1] geochemistrypi.data_mining.data.feature_engineering module, [1] geochemistrypi.data_mining.data.imputation module, [1] geochemistrypi.data_mining.data.inference module geochemistrypi.data_mining.data.preprocessing module, [1] geochemistrypi.data_mining.data.statistic module, [1] geochemistrypi.data_mining.datasets module geochemistrypi.data_mining.enum_ module geochemistrypi.data_mining.model module geochemistrypi.data_mining.model.classification module geochemistrypi.data_mining.model.clustering module geochemistrypi.data_mining.model.decomposition module geochemistrypi.data_mining.model.detection module geochemistrypi.data_mining.model.func module geochemistrypi.data_mining.model.func.algo_anomalydetection module geochemistrypi.data_mining.model.func.algo_classification module geochemistrypi.data_mining.model.func.algo_clustering module geochemistrypi.data_mining.model.func.algo_decomposition module geochemistrypi.data_mining.model.func.algo_regression module geochemistrypi.data_mining.model.regression module geochemistrypi.data_mining.plot module geochemistrypi.data_mining.plot.map_plot module geochemistrypi.data_mining.plot.statistic_plot module geochemistrypi.data_mining.process module geochemistrypi.data_mining.process.classify module

geochemistrypi.data_mining.process.cluster module geochemistrypi.data_mining.process.decompose module geochemistrypi.data_mining.process.detect module geochemistrypi.data_mining.process.regress module geochemistrypi.data_mining.process.time_series module geochemistrypi.data_mining.router module geochemistrypi.data_mining.run_embedding_label_overlay module geochemistrypi.data_mining.run_reference_anomaly_series module geochemistrypi.data_mining.run_time_series module geochemistrypi.data_mining.schemas module geochemistrypi.data_mining.service module geochemistrypi.data_mining.sql_models module geochemistrypi.data_mining.tests module geochemistrypi.data_mining.tests.test_aggregate module geochemistrypi.data_mining.tests.test_cli_capability_manifest module geochemistrypi.data_mining.tests.test_data module geochemistrypi.data_mining.tests.test_dataset_catalog module geochemistrypi.data_mining.tests.test_decomposition module geochemistrypi.data_mining.tests.test_detection module geochemistrypi.data_mining.tests.test_inference module geochemistrypi.data_mining.tests.test_model_base module geochemistrypi.data_mining.tests.test_regression_density_plot module geochemistrypi.data_mining.utils module geochemistrypi.data_mining.utils.base module geochemistrypi.data_mining.utils.exceptions module geochemistrypi.data_mining.utils.mlflow_utils module geochemistrypi.data_mining.utils.toggle_address_status module geochemistrypi.database module geochemistrypi.scientific_config module geochemistrypi.scientific_execution module geochemistrypi.start_dash_pipeline module geochemistrypi.tracking module geochemistrypi.tracking_cli module get_all_datasets() (in module geochemistrypi.data_mining.router) get_all_datasets_open() (in module geochemistrypi.data_mining.router) get_basic_datasets_info() (in module geochemistrypi.data_mining.router) get_current_active_user() (in module geochemistrypi.auth.dependencies) get_current_user() (in module geochemistrypi.auth.dependencies) get_database_url() (in module geochemistrypi.database) get_dataset() (in module geochemistrypi.data_mining.router) get_db() (in module geochemistrypi.database) get_engine() (in module geochemistrypi.database) get_experiment() (in module geochemistrypi.tracking) get_os() (in module geochemistrypi.data_mining.utils.base) get_password_hash() (in module geochemistrypi.auth.utils) get_session() (in module geochemistrypi.database) get_user_by_email() (in module geochemistrypi.auth.service) get_user_by_id() (in module geochemistrypi.auth.service) get_user_by_username() (in module geochemistrypi.auth.service) get_users() (in module geochemistrypi.auth.service) GradientBoostingClassification (class in geochemistrypi.data_mining.model.classification) GradientBoostingRegression (class in geochemistrypi.data_mining.model.regression)

H

hashed_password (User attribute), [1]

I

id (AutomationInput attribute) (BasicDatasetInfo attribute) (Dataset attribute), [1] (Diagram attribute), [1] (User attribute), [1] image (Diagram attribute), [1] imputer() (in module geochemistrypi.data_mining.data.imputation), [1] index2name() (FeatureConstructor method), [1] initialize_database() (in module geochemistrypi.start_dash_pipeline) input_expression() (FeatureConstructor method), [1]

input_feature_name() (FeatureConstructor method), [1] inputs (AutomationPlan attribute) install_package() (in module geochemistrypi.data_mining.utils.base) int_input() (in module geochemistrypi.data_mining.data.data_readiness), [1] InvalidFileError inverse_transform() (MeanNormalScaler method), [1] is_active (User attribute) (UserBase attribute) is_null_value() (in module geochemistrypi.data_mining.plot.statistic_plot) IsolationForestAnomalyDetection (class in geochemistrypi.data_mining.model.detection)

J

json_data (Dataset attribute), [1]

K

KMeansClustering (class in geochemistrypi.data_mining.model.clustering)

KNNClassification (class in geochemistrypi.data_mining.model.classification) KNNRegression (class in geochemistrypi.data_mining.model.regression)

L

label_mapping (ClassificationRunRequest attribute) LabelMappingConfig (class in geochemistrypi.data_mining.schemas) labels (LabelMappingConfig attribute) LassoRegression (class in geochemistrypi.data_mining.model.regression) latitude_column (WorldMapConfiguration attribute) letter_map() (FeatureConstructor method), [1] limit_num_input() (in module geochemistrypi.data_mining.data.data_readiness), [1] list_excel_files() (in module geochemistrypi.data_mining.utils.base) list_experiments() (in module geochemistrypi.tracking)

load() (AutomationPlan class method) (ScientificExecutionContract class method) load_time_series_data() (in module geochemistrypi.data_mining.run_time_series) LocalOutlierFactorAnomalyDetection (class in geochemistrypi.data_mining.model.detection) log() (in module geochemistrypi.data_mining.utils.base) log_distribution_plot() (in module geochemistrypi.data_mining.plot.statistic_plot) login_for_access_token() (in module geochemistrypi.auth.router) LogisticRegressionClassification (class in geochemistrypi.data_mining.model.classification) longitude_column (WorldMapConfiguration attribute)

M

main() (in module geochemistrypi.cli) (in module geochemistrypi.data_mining.run_time_series) (in module geochemistrypi.tracking_cli) manual_hyper_parameters() (AdaBoostClassification class method) (AffinityPropagationClustering class method) (Agglomerative class method) (AnomalyDetectionWorkflowBase class method) (BayesianRidgeRegression class method) (ClassicalLinearRegression class method) (ClassificationWorkflowBase class method) (ClusteringWorkflowBase class method) (DBSCANClustering class method) (DecisionTreeClassification class method) (DecisionTreeRegression class method) (DecompositionWorkflowBase class method) (ElasticNetRegression class method) (ExtraTreesClassification class method) (ExtraTreesRegression class method) (GradientBoostingClassification class method) (GradientBoostingRegression class method) (IsolationForestAnomalyDetection class method) (KMeansClustering class method) (KNNClassification class method) (KNNRegression class method) (LassoRegression class method) (LocalOutlierFactorAnomalyDetection class method) (LogisticRegressionClassification class method) (MDSDecomposition class method) (MeanShiftClustering class method) (MLPClassification class method) (MLPRegression class method) (OPTICSClustering class method) (PCADecomposition class method) (PolynomialRegression class method) (RandomForestClassification class method) (RandomForestRegression class method) (RegressionWorkflowBase class method) (RidgeRegression class method) (SGDClassification class method) (SGDRegression class method) (SVMClassification class method) (SVMRegression class method) (TSNEDecomposition class method) (XGBoostClassification class method) (XGBoostRegression class method) map_projected_by_basemap() (in module geochemistrypi.data_mining.plot.map_plot) map_projected_by_cartopy() (in module geochemistrypi.data_mining.plot.map_plot) mapping (LabelMappingConfig attribute) MDSDecomposition (class in geochemistrypi.data_mining.model.decomposition) MeanNormalScaler (class in geochemistrypi.data_mining.data.preprocessing), [1] MeanShiftClustering (class in geochemistrypi.data_mining.model.clustering) method (ScientificExecutionContract attribute) metric_average (ClassificationRunRequest attribute) MissingAutomationInputError MLPClassification (class in geochemistrypi.data_mining.model.classification) MLPRegression (class in geochemistrypi.data_mining.model.regression) model_inference() (in module geochemistrypi.data_mining.data.inference) model_name (ClassificationRunRequest attribute) model_parameter_entries (ScientificExecutionContract attribute) model_parameters (ScientificExecutionContract property) model_seed (ScientificExecutionContract attribute) ModeOption (class in geochemistrypi.data_mining.enum_) ModeOptionWithMissingValues (class in geochemistrypi.data_mining.enum_) module geochemistrypi geochemistrypi.auth geochemistrypi.auth.constants geochemistrypi.auth.dependencies geochemistrypi.auth.router geochemistrypi.auth.schemas geochemistrypi.auth.service geochemistrypi.auth.sql_models geochemistrypi.auth.utils geochemistrypi.automation geochemistrypi.cli geochemistrypi.data_mining geochemistrypi.data_mining.aggregate geochemistrypi.data_mining.cli_pipeline geochemistrypi.data_mining.constants geochemistrypi.data_mining.dash_pipeline geochemistrypi.data_mining.data geochemistrypi.data_mining.data.data_readiness, [1] geochemistrypi.data_mining.data.feature_engineering, [1] geochemistrypi.data_mining.data.imputation, [1] geochemistrypi.data_mining.data.inference geochemistrypi.data_mining.data.preprocessing, [1] geochemistrypi.data_mining.data.statistic, [1] geochemistrypi.data_mining.datasets geochemistrypi.data_mining.enum_ geochemistrypi.data_mining.model geochemistrypi.data_mining.model.classification geochemistrypi.data_mining.model.clustering geochemistrypi.data_mining.model.decomposition geochemistrypi.data_mining.model.detection geochemistrypi.data_mining.model.func geochemistrypi.data_mining.model.func.algo_anomalydetection geochemistrypi.data_mining.model.func.algo_classification geochemistrypi.data_mining.model.func.algo_clustering geochemistrypi.data_mining.model.func.algo_decomposition geochemistrypi.data_mining.model.func.algo_regression geochemistrypi.data_mining.model.regression geochemistrypi.data_mining.plot geochemistrypi.data_mining.plot.map_plot geochemistrypi.data_mining.plot.statistic_plot geochemistrypi.data_mining.process geochemistrypi.data_mining.process.classify geochemistrypi.data_mining.process.cluster geochemistrypi.data_mining.process.decompose geochemistrypi.data_mining.process.detect geochemistrypi.data_mining.process.regress geochemistrypi.data_mining.process.time_series geochemistrypi.data_mining.router geochemistrypi.data_mining.run_embedding_label_overlay geochemistrypi.data_mining.run_reference_anomaly_series geochemistrypi.data_mining.run_time_series geochemistrypi.data_mining.schemas geochemistrypi.data_mining.service geochemistrypi.data_mining.sql_models geochemistrypi.data_mining.tests geochemistrypi.data_mining.tests.test_aggregate geochemistrypi.data_mining.tests.test_cli_capability_manifest geochemistrypi.data_mining.tests.test_data geochemistrypi.data_mining.tests.test_dataset_catalog geochemistrypi.data_mining.tests.test_decomposition geochemistrypi.data_mining.tests.test_detection geochemistrypi.data_mining.tests.test_inference geochemistrypi.data_mining.tests.test_model_base geochemistrypi.data_mining.tests.test_regression_density_plot geochemistrypi.data_mining.utils geochemistrypi.data_mining.utils.base geochemistrypi.data_mining.utils.exceptions geochemistrypi.data_mining.utils.mlflow_utils geochemistrypi.data_mining.utils.toggle_address_status geochemistrypi.database geochemistrypi.scientific_config geochemistrypi.scientific_execution geochemistrypi.start_dash_pipeline geochemistrypi.tracking geochemistrypi.tracking_cli

monte_carlo_simulator() (in module geochemistrypi.data_mining.data.statistic), [1]

N

name (AdaBoostClassification attribute) (AffinityPropagationClustering attribute) (Agglomerative attribute) (BasicDatasetInfo attribute) (BayesianRidgeRegression attribute) (BIRCHClusteringClustering attribute) (BisectingKMeansClustering attribute) (ClassicalLinearRegression attribute) (Dataset attribute), [1] (DBSCANClustering attribute) (DecisionTreeClassification attribute) (DecisionTreeRegression attribute) (Diagram attribute), [1] (ElasticNetRegression attribute) (ExtraTreesClassification attribute) (ExtraTreesRegression attribute) (GaussianMixturesClustering attribute) (GradientBoostingClassification attribute) (GradientBoostingRegression attribute) (IsolationForestAnomalyDetection attribute) (KMeansClustering attribute) (KNNClassification attribute) (KNNRegression attribute) (LassoRegression attribute) (LocalOutlierFactorAnomalyDetection attribute) (LogisticRegressionClassification attribute) (MDSDecomposition attribute) (MeanShiftClustering attribute) (MLPClassification attribute) (MLPRegression attribute) (OPTICSClustering attribute) (PCADecomposition attribute) (PolynomialRegression attribute) (RandomForestClassification attribute) (RandomForestRegression attribute) (RidgeRegression attribute) (SGDClassification attribute) (SGDRegression attribute) (SpectralClustering attribute) (SVMClassification attribute) (SVMRegression attribute) (TSNEDecomposition attribute) (WardHierarchicalClustering attribute) (XGBoostClassification attribute) (XGBoostRegression attribute)

np2pd() (in module geochemistrypi.data_mining.data.data_readiness), [1] num2option() (in module geochemistrypi.data_mining.data.data_readiness), [1] num_classes (LabelMappingConfig attribute) num_input() (in module geochemistrypi.data_mining.data.data_readiness), [1]

O

oper (FeatureConstructor attribute), [1] OPTICSClustering (class in geochemistrypi.data_mining.model.clustering)

optional_num_input() (in module geochemistrypi.data_mining.data.data_readiness), [1] orm_mode (User.Config attribute)

P

password (UserCreate attribute) PCADecomposition (class in geochemistrypi.data_mining.model.decomposition) PipelineConstrutor (class in geochemistrypi.data_mining.data.inference) plan_name (AutomationPlan attribute) plot_and_save() (in module geochemistrypi.data_mining.process.time_series) poly() (PolynomialRegression method) PolynomialRegression (class in geochemistrypi.data_mining.model.regression)

post_dataset() (in module geochemistrypi.data_mining.router) predict (ClassificationWorkflowBase attribute) (RegressionWorkflowBase attribute) predict() (AnomalyDetectionWorkflowBase method) prepare_time_series_dataframe() (in module geochemistrypi.data_mining.run_time_series) probability_plot() (in module geochemistrypi.data_mining.plot.statistic_plot) process_world_map() (in module geochemistrypi.data_mining.plot.map_plot)

R

RandomForestClassification (class in geochemistrypi.data_mining.model.classification) RandomForestRegression (class in geochemistrypi.data_mining.model.regression) ratio_null_vs_filled() (in module geochemistrypi.data_mining.plot.statistic_plot) ray_tune() (MLPClassification method) (MLPRegression method) (RegressionWorkflowBase method) read_all_datasets() (in module geochemistrypi.data_mining.service) read_basic_datasets_info() (in module geochemistrypi.data_mining.service) read_data() (in module geochemistrypi.data_mining.data.data_readiness), [1] read_dataset() (in module geochemistrypi.data_mining.service) read_root() (in module geochemistrypi.start_dash_pipeline) read_users_me() (in module geochemistrypi.auth.router) reference_anomaly_time_series() (in module geochemistrypi.cli) register() (in module geochemistrypi.auth.router) registered_scientific_workflows() (in module geochemistrypi.scientific_config) REGRESSION (ModeOption attribute) (ModeOptionWithMissingValues attribute)

RegressionModelSelection (class in geochemistrypi.data_mining.process.regress) RegressionWorkflowBase (class in geochemistrypi.data_mining.model.regression) remove_dataset() (in module geochemistrypi.data_mining.service) require_experiment() (in module geochemistrypi.tracking) resolve_classification_metric_configuration() (in module geochemistrypi.scientific_execution) resolve_tracking_root() (in module geochemistrypi.tracking) resolved_model_parameters() (ScientificExecutionContract method) response (AutomationInput attribute) retrieve_previous_experiment_id() (in module geochemistrypi.data_mining.utils.mlflow_utils) RidgeRegression (class in geochemistrypi.data_mining.model.regression) run_classification_pipeline() (in module geochemistrypi.data_mining.router) run_embedding_label_overlay() (in module geochemistrypi.data_mining.run_embedding_label_overlay) run_reference_anomaly_series() (in module geochemistrypi.data_mining.run_reference_anomaly_series) run_time_series_analysis() (in module geochemistrypi.data_mining.run_time_series) run_time_series_dataframe() (in module geochemistrypi.data_mining.run_time_series)

S

safe_child_error() (in module geochemistrypi.data_mining.aggregate) sample_balance() (ClassificationWorkflowBase static method) save_data() (in module geochemistrypi.data_mining.utils.base) save_data_without_data_identifier() (in module geochemistrypi.data_mining.utils.base) save_external_regression_evaluation() (in module geochemistrypi.data_mining.data.inference) save_fig() (in module geochemistrypi.data_mining.utils.base) save_model() (in module geochemistrypi.data_mining.utils.base) save_scientific_execution_attestation() (in module geochemistrypi.scientific_execution) save_text() (in module geochemistrypi.data_mining.utils.base) schema_version (AutomationPlan attribute) (ScientificExecutionContract attribute) scientific_config_command() (in module geochemistrypi.cli) scientific_config_document_json() (in module geochemistrypi.scientific_config) scientific_config_registry_document() (in module geochemistrypi.scientific_config) scientific_execution_context() (in module geochemistrypi.scientific_execution) scientific_execution_example() (in module geochemistrypi.scientific_config) scientific_execution_json_schema() (in module geochemistrypi.scientific_config) ScientificExecutionContract (class in geochemistrypi.scientific_execution) ScientificExecutionContractError select_column_name() (in module geochemistrypi.data_mining.data.data_readiness), [1] select_columns() (in module geochemistrypi.data_mining.data.data_readiness), [1] semantic_label_identity() (in module geochemistrypi.scientific_execution) semantic_mode_number() (in module geochemistrypi.data_mining.cli_pipeline) sequence (BasicDatasetInfo attribute) (Dataset attribute), [1] set_active_experiment() (in module geochemistrypi.data_mining.utils.mlflow_utils) set_transform_request() (MeanNormalScaler method), [1] settings (AdaBoostClassification property) (BayesianRidgeRegression property) (ClassificationWorkflowBase property) (DecisionTreeClassification property) (DecisionTreeRegression property) (ElasticNetRegression property) (ExtraTreesClassification property) (ExtraTreesRegression property) (GradientBoostingClassification property) (GradientBoostingRegression property) (KNNClassification property) (KNNRegression property) (LassoRegression property) (LogisticRegressionClassification property) (RandomForestClassification property) (RandomForestRegression property) (RegressionWorkflowBase property) (RidgeRegression property) (SGDClassification property) (SGDRegression property) (SVMClassification property) (SVMRegression property) (XGBoostClassification property) (XGBoostRegression property) SGDClassification (class in geochemistrypi.data_mining.model.classification) SGDRegression (class in geochemistrypi.data_mining.model.regression) show_data_columns() (in module geochemistrypi.data_mining.data.data_readiness), [1] show_excel_columns() (in module geochemistrypi.data_mining.data.data_readiness), [1] show_warning() (in module geochemistrypi.data_mining.utils.base) source_sha256 (ScientificExecutionContract attribute) special_components (AdaBoostClassification attribute) (BayesianRidgeRegression attribute) (DecisionTreeClassification attribute) (DecisionTreeRegression attribute) (ElasticNetRegression attribute) (ExtraTreesClassification attribute) (ExtraTreesRegression attribute) (GradientBoostingClassification attribute) (GradientBoostingRegression attribute) (KNNClassification attribute) (KNNRegression attribute) (LassoRegression attribute) (LogisticRegressionClassification attribute) (MLPClassification attribute) (MLPRegression attribute) (RandomForestClassification attribute) (RandomForestRegression attribute) (RidgeRegression attribute) (SGDClassification attribute) (SGDRegression attribute) (SVMClassification attribute) (SVMRegression attribute) (XGBoostClassification attribute) (XGBoostRegression attribute)

special_components() (AffinityPropagationClustering method) (Agglomerative method) (ClassicalLinearRegression method) (DBSCANClustering method) (IsolationForestAnomalyDetection method) (KMeansClustering method) (LocalOutlierFactorAnomalyDetection method) (MDSDecomposition method) (MeanShiftClustering method) (OPTICSClustering method) (PCADecomposition method) (PolynomialRegression method) (TSNEDecomposition method) special_function (AdaBoostClassification attribute) (Agglomerative attribute) (BayesianRidgeRegression attribute) (ClassicalLinearRegression attribute) (DBSCANClustering attribute) (DecisionTreeClassification attribute) (DecisionTreeRegression attribute) (ElasticNetRegression attribute) (ExtraTreesClassification attribute) (ExtraTreesRegression attribute) (GradientBoostingClassification attribute) (GradientBoostingRegression attribute) (IsolationForestAnomalyDetection attribute) (KMeansClustering attribute) (KNNClassification attribute) (KNNRegression attribute) (LassoRegression attribute) (LocalOutlierFactorAnomalyDetection attribute) (LogisticRegressionClassification attribute) (MDSDecomposition attribute) (MeanShiftClustering attribute) (MLPClassification attribute) (MLPRegression attribute) (OPTICSClustering attribute) (PCADecomposition attribute) (PolynomialRegression attribute) (RandomForestClassification attribute) (RandomForestRegression attribute) (RidgeRegression attribute) (SGDClassification attribute) (SGDRegression attribute) (SVMClassification attribute) (SVMRegression attribute) (TSNEDecomposition attribute) (XGBoostClassification attribute) (XGBoostRegression attribute) SpectralClustering (class in geochemistrypi.data_mining.model.clustering) split_seed (ScientificExecutionContract attribute) split_strategy (ScientificExecutionContract attribute) str_input() (in module geochemistrypi.data_mining.data.data_readiness), [1] SVMClassification (class in geochemistrypi.data_mining.model.classification) SVMRegression (class in geochemistrypi.data_mining.model.regression)

T

target_column (ClassificationRunRequest attribute) target_transformation_entries (ScientificExecutionContract attribute) test_aggregate_manifest_is_atomic_complete_and_counts_child_artifacts() (in module geochemistrypi.data_mining.tests.test_aggregate) test_aggregate_manifest_reports_complete_only_without_failures() (in module geochemistrypi.data_mining.tests.test_aggregate) test_anomaly_detection_keeps_prediction_labels_for_downstream_plots() (in module geochemistrypi.data_mining.tests.test_detection) test_build_transform_pipeline_accepts_unsupervised_target() (in module geochemistrypi.data_mining.tests.test_inference) test_compact_builtin_counts_ignore_formatted_blank_excel_rows() (in module geochemistrypi.data_mining.tests.test_dataset_catalog) test_datasets_help_discovers_full_inspection_contract() (in module geochemistrypi.data_mining.tests.test_dataset_catalog) test_density_colorbars_are_outside_the_training_and_testing_panels() (in module geochemistrypi.data_mining.tests.test_regression_density_plot) test_density_estimation_splits_sklearn_inlier_and_outlier_labels() (in module geochemistrypi.data_mining.tests.test_detection) test_density_workflow_preserves_the_figures_constrained_layout() (in module geochemistrypi.data_mining.tests.test_regression_density_plot) test_desktop_discovery_does_not_create_a_missing_directory() (in module geochemistrypi.data_mining.tests.test_dataset_catalog) test_desktop_discovery_is_read_only_non_recursive_and_format_limited() (in module geochemistrypi.data_mining.tests.test_dataset_catalog) test_desktop_discovery_warns_when_a_file_changes_during_read() (in module geochemistrypi.data_mining.tests.test_dataset_catalog) test_every_declared_builtin_is_listed_without_modification() (in module geochemistrypi.data_mining.tests.test_dataset_catalog) test_exact_builtin_selector_constructs_only_the_selected_entry() (in module geochemistrypi.data_mining.tests.test_dataset_catalog) test_external_regression_evaluation_binds_data_to_an_explicit_figure() (in module geochemistrypi.data_mining.tests.test_inference) test_full_classification_inspection_reports_scientific_quality_fields() (in module geochemistrypi.data_mining.tests.test_dataset_catalog) test_full_inspection_combines_missing_and_nonfinite_rows_and_emits_strict_json() (in module geochemistrypi.data_mining.tests.test_dataset_catalog) test_full_time_series_inspection_reports_selected_missing_row_contract() (in module geochemistrypi.data_mining.tests.test_dataset_catalog) test_hyper_parameters_are_strict_json_without_changing_mlflow_logging() (in module geochemistrypi.data_mining.tests.test_model_base) test_isolation_forest_uses_auto_max_samples_when_bootstrap_is_disabled() (in module geochemistrypi.data_mining.tests.test_detection) test_manifest_tracks_cli_modes_models_and_bundled_datasets() (in module geochemistrypi.data_mining.tests.test_cli_capability_manifest)

test_manifest_tracks_every_active_typer_command_and_option() (in module geochemistrypi.data_mining.tests.test_cli_capability_manifest) test_once() (in module geochemistrypi.data_mining.data.statistic), [1] test_pca_component_selection_applies_to_scores_and_loadings() (in module geochemistrypi.data_mining.tests.test_decomposition) test_pca_special_components_reuses_generated_principal_component_table() (in module geochemistrypi.data_mining.tests.test_decomposition) test_repository_has_no_non_strict_xfail_escape_hatch() (in module geochemistrypi.data_mining.tests.test_cli_capability_manifest) test_scientific_feature_selector_can_defer_fit_until_after_split() (in module geochemistrypi.data_mining.tests.test_inference) test_scientific_scaling_and_selection_fit_only_the_training_partition() (in module geochemistrypi.data_mining.tests.test_inference) test_supervised_empty_config_saves_replayable_identity_pipeline() (in module geochemistrypi.data_mining.tests.test_inference) test_supported_manifest_entries_have_evidence_and_known_gaps_are_visible() (in module geochemistrypi.data_mining.tests.test_cli_capability_manifest) test_unsupervised_empty_config_does_not_save_pipeline() (in module geochemistrypi.data_mining.tests.test_inference) time_series() (in module geochemistrypi.cli) toggle_data_source() (in module geochemistrypi.data_mining.utils.toggle_address_status) tracking_uri() (in module geochemistrypi.tracking) TrackingStoreError training_components() (RegressionWorkflowBase method) transform() (DecompositionWorkflowBase method) (MeanNormalScaler method), [1] transform_feature_frame() (in module geochemistrypi.data_mining.data.inference) transform_targets() (ScientificExecutionContract method) transformer_dict (PipelineConstrutor property) TSNEDecomposition (class in geochemistrypi.data_mining.model.decomposition) tuple_input() (in module geochemistrypi.data_mining.data.data_readiness), [1] type (LabelMappingConfig attribute)

U

UnusedAutomationInputError update_user() (in module geochemistrypi.auth.router) upload_count (User attribute) (UserBase attribute) upload_dataset() (in module geochemistrypi.data_mining.service) User (class in geochemistrypi.auth.schemas) (class in geochemistrypi.auth.sql_models)

user (Dataset attribute) User.Config (class in geochemistrypi.auth.schemas) user_id (Dataset attribute), [1] UserBase (class in geochemistrypi.auth.schemas) UserCreate (class in geochemistrypi.auth.schemas) username (User attribute) (UserBase attribute)

V

validate_selected_workflow() (ScientificExecutionContract method)

value_columns (WorldMapConfiguration attribute) verify_password() (in module geochemistrypi.auth.utils)

W

WardHierarchicalClustering (class in geochemistrypi.data_mining.model.clustering) workflow_family (ScientificExecutionContract attribute) workflow_mode (ScientificExecutionContract attribute) WorldMapConfiguration (class in geochemistrypi.data_mining.plot.map_plot)

WorldMapConfigurationError WorldMapRendererError write_aggregate_manifest() (in module geochemistrypi.data_mining.aggregate) write_scientific_config_document() (in module geochemistrypi.scientific_config)

X

XGBoostClassification (class in geochemistrypi.data_mining.model.classification)

XGBoostRegression (class in geochemistrypi.data_mining.model.regression)